Previous Versions
Xenium Ranger 4.0.0 (Sep 2, 2025)
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Download for Linux 64-bit (tar.gz)File size: 3.5 GBmd5sum: c063db33f59ac7df642ca6b8d3ae6adccurlwgetcurl -o xeniumranger-4.0.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-4.0.0.tar.gz?Expires=1774657636&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=H8iewIdjVvy86FkZEGVuoFSLnpnejD9RbkF1KRPfHq~kuA4zr758r0-FfxP5Qexu5ipbG00omobWQ~rkrmbrGfah3h0S8Ob4GACL77hSKKdULzHU55DpDve2tjvkO1aMDE7VTi2iS2zGu73dOTSvXTNr17jjUrGfIVvMcUqQgbaha6aG5uC0GbcLegJf~B6j4YSnWH4YL59MhkGKhoOXTAQ~Dw7tVd8v6V96zbEgR326Z5nMpei1lD6xAD9xsktSGZJvTZ8Mh0bOP~wHVwhBUgINnYqDSvvGgmhgGOxfpODku4eQHYOX4wMTtZrGsARYC-3Dxg~ZP5lHPa4~QpcaYA__"tar.xz compression
Download for Linux 64-bit (tar.xz)File size: 2.3 GBmd5sum: 3a1636bd176257c0edad991660b13bfdcurlwgetcurl -o xeniumranger-4.0.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-4.0.0.tar.xz?Expires=1774657636&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=i4szeb0ZU4cJW3ezayP6XurKs~YqXSqxFPjUUDW3dTrOxSt3q9X4rcjyUuErg60NgHzOioDqUwQl1gQl~LzL6sFjw0VYxdMFOj-unHyj3FYDzXn-~mKtY6-KT68UwLjvequwMNk983dy-p4pz85gW-HfAvgV74rWEHEaT~nGBNrCQxC16jq5jX9cwjb8fnFIeaP6Uop3un03T09LAaYvd1nLwvblCBS4hdttc2BMHL2a8YFQ6Cj4r-s71zIZCKPwpNYd2gRds0ql7CxO~Rqz~N4JXe~7ZHnYdpcGIiYlOS4BSa3WKUV0-xsYru1HTlqrUP2uezDj5m24dLSdpjXltw__"
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Xenium Ranger 4.0.0 highlights
- Supports reanalysis of Xenium Onboard Analysis data up to XOA v4.0.
- Segment previously un-segmentable large cells with the new large cell segmentation feature.
- Substitute a boundary or interior stain with a Xenium Protein image for multimodal cell segmentation.
- Map cell IDs between a Xenium Ranger output and the imported segmentation to join metadata for a third-party analysis.
- And more - see full release notes.
Xenium Ranger 3.1.1 (Mar 11, 2025)
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Download for Linux 64-bit (tar.gz)File size: 2.9 GBmd5sum: 38c202b0fd5ea38522627e9df129a873curlwgetcurl -o xeniumranger-3.1.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.1.1.tar.gz?Expires=1774657636&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Fp1JOhWU0YDjKP0u0l8rqc1UKErT7pGdy0IDiEv8060oB2OpyEUvElL0S-DKukpxLmQo4tbOCVc-cdWDqGRiv3wOepIruPUupXMoy4uolKo2uonPcngiiIuA-QYR4dRgyPKt9cCwFSpwmh7zMjpWhvIJ84205qRrIJ~A5i-IrOLfiXAS9I5Oiv5W0jFiKl5NwS9lW1aWdvytwj2SIzLMSTkF~g~C3KSaDFKMF~V1n7yU86sJPb~s7t51~~-CPp7skQMSiJSluDzTBcAy6Yx948c5TLWl1JEAKqG-y9omL8ozH~dA1nuRwCwan4PrcMGkmn7tu5GTHQMMqIIg6IXqBg__"tar.xz compression
Download for Linux 64-bit (tar.xz)File size: 1.8 GBmd5sum: c38f7bb506d7675481c55d6555a3694dcurlwgetcurl -o xeniumranger-3.1.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.1.1.tar.xz?Expires=1774657636&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=ouMzykX8gVPs~pJMBY6SkIGf8KEp6Je2Ov50jNjbA~weWXaCVaFvjz1pT7wYy2WOfa9WJ4wapJcm64LyxjqLcXhARWQH1fmSr9bu91Ydgiti~X9fE2oLANdi7sPhaq5PO7paKgdtYiSTCCPCAjY3c3P3SF16jh9F4aJL7XVeHYFd1zZSIknuBlHuIvr5S2xAPRylZt3Pl2Mnsy6rjTj~o1-UDNBnUnJM0cIj5SFYwJKIPIhA7eoQ~9vH3L44TKuvEAgM0waN1regYoD6BP86GJUxC8~TkRKzPGnCVolJhQT0Ap8Y9VzkozqxPKE68Ij7CN~b8P9WMhwdCNKob-iBAg__"
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Xenium Ranger 3.1.1 highlights
- Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
- Improved boundary stain cell segmentation.
- Upgrades file formats to view per-codeword localization plots for custom and boosted genes in Xenium Explorer v3.2.
- Fixed open polygons bug to enable importing Baysor v0.7.
- And more - see full release notes.
Xenium Ranger 3.0.1 (Sep 19, 2024)
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Download for Linux 64-bit (tar.gz)File size: 2.9 GBmd5sum: e8e98a0c6b4d5b127bcaf9801bfe3d69curlwgetcurl -o xeniumranger-3.0.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.1.tar.gz?Expires=1774657636&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=M2j1GOMa47ixBxL87b5MbW4dH1~iBul~mdR7DLJg42QRwU94HQC-pNkTBkawmCQegyNn2381r~MJUTF~jpcQdn-xF8yl1ifL9gZoIymsg4uCSYvsDCNi~4LNUqEC8ublxFtHD6Fq0XrMBSverf63YehdZnmULb0ipdRsZ0tEf4tBZz0S6xCXOJq02axsEoGPoL4rXNthHnxBZ9yc3bs5lM6J1L~xM0YYrsoCWwQlmb9YMm0m6R4ipvsdagll5g5noj1k3O1GGfjaOtTjehQtiRWCzzGCWwZudLCugyurkmBkLeSoCYaLykqZSVdlJiauvaK4OxEs~vv8dRe2LwtTxQ__"tar.xz compression
Download for Linux 64-bit (tar.xz)File size: 1.7 GBmd5sum: 276f6073a170c236b76b04fa3919beefcurlwgetcurl -o xeniumranger-3.0.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.1.tar.xz?Expires=1774657636&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=f4KpB0pffgbi6UJGTjwLXD74vyJ2galWHP3Ft6SNJlZVS-6x9ITXEzZ89RIxOyw6RSVLfTi64TifW2~OF46Ar4RCPVsgNNeSKxp~jVtFl5IPNWv4FsIsHlza9Fu~s~tj0k0~OuSkR0AOxtp35MrXMGtXg665WjxlCMEnpvLGFLpBcrwqAs9diswgms0wDv9xGUNV9~KI4cQBGCGKbp11LZCvoXhvjd-0NvJ-L8Ihjx70Z620gOaL-u8kwiv55zAyplg7tH6AaELomNdA-jwWmtznGTMQsRRALj-7NSYgluNIL36~44orqx5NauKlLyvEiCeEjvAjqrLgyq6AQZAnDg__"
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Xenium Ranger 3.0.1 highlights
- Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
- Reanalyzed data gets updated scaled transcript view in Xenium Explorer and analysis summary features introduced in XOA v3.0.
- New rename subcommand for editing the region and cassette names.
- Robust to corner cases of importing transcript-assignment data with empty cells.
- And more - see full release notes.
Xenium Ranger 2.0.1 (Jun 10, 2024)
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Download for Linux 64-bit (tar.gz)File size: 2.7 GBmd5sum: 45d207dc432226dc003a31a287f5ec08curlwgetcurl -o xeniumranger-2.0.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.gz?Expires=1774657636&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=BF3R2RfWg0keu2Puwe6QZLQMJxw537R0XPIjV2G1INxoYc-wmkaeleepbZ73HT5daSIGYL0SleaT1awLcwsizsU9c8H9cloG33TOiapuED3XAfNKhKOEAv-7M49mqBFqM7VuZXZMoaZB1Mu2yLYw8eWF8-rAhmjzTjibkP0kCbEYo1bi6Kc5slSd7qWbpUNR7DbbDA-FBfQkapP0Pj1cDPWTumzm86TzmAOsAOMqozOjbejmvM8FVTcpaHNOiDQoF2Uf11s3iuxUq6YPem~8h2QTqH7RTBxARgi~h7Z8HXFmIUnkReEVjxv1Wqq1LYrnh1PFCcc4dnEReW62CMQniQ__"tar.xz compression
Download for Linux 64-bit (tar.xz)File size: 1.6 GBmd5sum: 244bdbb3d159ff557a7747c03ec487a7curlwgetcurl -o xeniumranger-2.0.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.xz?Expires=1774657636&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=OSxDLeJZyAQHfCw8bjTy5K2w8zFfxvgmgpcstjnOQu0KZlZ7m2LtWEoKQdXY0NAsmWqBFgCU1xJdiZr13hDAmaMO5vQssXLq-1bWAGR0-mc41aC2fqJ1RAN57NuEZCgPZmP4JXF01EzsCeTK7C-H-M5rRDid-zyYkQHN7~AE0-1l3OAedqpdSc9L7ZIRdQa3SG4r1Rg~s2nZvv8cugtgYw7vk-ZlXz0TfW4xZvOI1axurtKEHPWyXOpghbfU30QNTj1~b85rq47MJ3Yswt8Ac~VbD1Y8vxrNUGPLf0aeS221ObY9NzTr765-72e0ZqWvW-yEx2xFzrk4FND9lJseHA__"
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Xenium Ranger 2.0.1 highlights
- Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
- Default nuclear expansion distance is 5 µm.
- Enables reanalysis with multimodal cell segmentation algorithm.
- Interrupted runs can be resumed.
Xenium Ranger 1.7.1 (Jan 23, 2024)
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Download for Linux 64-bit (tar.gz)File size: 2.58 GBmd5sum: 51c373964e46c041e08ba73888657eddcurlwgetcurl -o xeniumranger-1.7.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.gz?Expires=1774657636&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=LZ5VewCD7SBsWYlrUj7Dd4kFg5GvlDDBPtqD5fW3bnwbLgN77wRx9ntT4v9La7c5OJBzqVEu0kvVXF97RYQq6yvZlbqMVTumxGW7aTDHN~tkzoky-9ib4Rlu-WRojPMJXQi0vAxg8yTRecFNvM9OuRw1aoC00eIY0sls8cfNtsWXx5AxOhzvpi92D1rRGt9ASmE4fAvOIhBJLXlq8bO2I~pMaoltK1HlgCCYcGcCVeb87zJk0pvGFuLIlH95S8Gq3JGyVhij041bWvYqvaltYz5pJXGkEvSZHsjQE9XNbPmyxjUeHI~QTOfTu1qB5KYkJB8Ldc7Qb1nf41LUiqIgow__"tar.xz compression
Download for Linux 64-bit (tar.xz)File size: 1.56 GBmd5sum: 43e6e4433303aae30973682dc5219f20curlwgetcurl -o xeniumranger-1.7.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.xz?Expires=1774657636&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=fSEnngjGxlp1ts3RxJZBlxVXBIqG6tmNr6tMoWHW4Me9aSk0xG3DY2hPDsE-JeKm2nRLb04JUO5vPkCgDHMchfa7sBZnjXjyNs0nrtNDfZcJRQwF1P-zcq6TKDAoei5OnHVie3bQcDnJHqLMhDMZi-Gx-SmxNmHRIv51st0M8VfQilcfNQp9k3Hn24HrkOZGlr1iD~p1zsq6S2nWaFdpEDzL57ozoC8yhpQ5dYqp5lp2hvLFHNIe3dOApIdPzUYdowF~MEvNSRrYbK5atnCvLNPVdEegKlhtXFL9eq11WaihTGUAkkIXgJvX2CNt5FOV-VHMqunL2zMKJYVxsumRBw__"
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Xenium Ranger 1.7.1 highlights
- Supports reanalysis of Xenium Onboard Analysis data up to latest version.
- Image-based import-segmentation now compatible with segmentation masks.
- Improved memory usage in the import-segmentation pipeline.
Xenium Ranger 1.6.0 (Aug 17, 2023)
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Download for Linux 64-bit (tar.gz)File size: 2.58 GBmd5sum: ebd970ceafc057668b9e664df310a5fbcurlwgetcurl -o xeniumranger-1.6.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.gz?Expires=1774657636&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=J5uBEiJw5VNbt7MLP3dNNBuYngbkvne588s5Qyw4rSCOqb2-77PtGjwpqHplEybxv53UDsRB0-~eebTGM7FzQTn9oyqOWjqMi~Z4TtbwFgWPGTJ6wiAKghpvmVvY89~7iXP66GjS1O98SknlYRMhPKXpRxN4JvEVgA166Xabt7YGtpEXwZVe2iA7T12amTftjhStG8qVM45xxa7PzX8l1vb6FKGs51y6gn52FOFmPr-nF8KYFF-B5rKtD3E4RtDy-UuIRkl3Vko6zXzLHBzsp~UNeqCv0PIIn193V8mtk~7CRw6vtyGIxJ9v7tBFi3r2ml~or7vkXfGNS3ACoefGnQ__"tar.xz compression
Download for Linux 64-bit (tar.xz)File size: 1.56 GBmd5sum: 6fa799cfeef91264fdc174ad43b6da3fcurlwgetcurl -o xeniumranger-1.6.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.xz?Expires=1774657636&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=gMB4LJNDSsSwHiPdGLHVmUzvtoIVaI~58RAm0CFdELU6wXaMDl8rGI92jX6WdbgDjyV2RgFUWmg1W8fmiQqGJhyGtCcwQ~w0mIeLTo1MfGPj7qMn-HXh0V6KNqwZ82gjso2tyy4qJg2sIZ~sv~omqWz4Kb4xfDjVq9cTVxpVtwzOzXnBl-GkpZABiq0pJcSKQvPwESCG6N6G6oHF6s5XIQPfin-8IYF7TrMG0v5IlzW8rtHLLZAo~S0AUodlvOnCESp6xM-qBtgdHj43L0cZN~KTd938wBbVMasAM31TVQlDGxE-8lIt6R7HwnQdkF5wvdsc~T9WSbX1scKNoHKRGQ__"
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Xenium Ranger 1.6.0 highlights
- Initial release of Xenium Ranger!
- Resegment Xenium data with customizable nucleus expansion distance and the latest 10x cell segmentation algorithm.
- Import community-developed nucleus and cell segmentations in multiple popular formats (i.e., Baysor).
- Selected the wrong gene panel when you started the Xenium Analyzer run? Simply fix the mistake by using relabel.
- All pipelines produce the same output bundle as Xenium Onboard Analysis v1.6, so they are compatible with the same downstream visualization and analysis softwares (e.g., Xenium Explorer).
- Backwards compatible with all previous Xenium Onboard Analysis versions.