Support homeCell Ranger ATACDownload and Installation
Previous Versions

Previous Versions

Cell Ranger ATAC 2.2.0 (Apr 30, 2025)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 661 MB
    md5sum: c616198bd9aaca393f99c71e07ae46b6
    curl -o cellranger-atac-2.2.0.tar.gz "https://cf.10xgenomics.com/releases/cell-atac/cellranger-atac-2.2.0.tar.gz?Expires=1774674449&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=U-MtR0B0KKD7kVS7OpMV2gy4dZ6aHTJvSqiCa5er9wSHFIvtmPifF-HGtRTk3C7ZW4BZKFXwEzD~0S6aLo-43Cm~TgnOVDTl0KCGMoJe8uMLSBNU348y8~6rdF4FdfLEYHiEBiaZ6EirqZsPTDPsEaOZaP9O75YcHL1iaBzhrQ0a4J2hTZ4qou12Z~Ue7ExlKFJn2S7C0Qplw85biK3GbW7DzZpgW033IGdRtCcSYYkjyRzLM3gdYYYgaVL140zlXV5-X-E3W89mY8A~~ERUAe7WfPHVD~QUFi2RyilOifVypF5cClwBkzzSNyBvCyqCH3kummsphaUPjdzXJUB3Mw__"

Download is unavailable on mobile devices.

Cell Ranger ATAC 2.2.0 highlights

  • The 20,000 total cell limit has been removed from cellranger-atac pipelines, enabling the analysis of large datasets
  • Strand information is now included in the fragments.tsv file for easier downstream analysis
  • The --nosecondary parameter is now enabled for count and aggr pipelines
  • Minor performance improvements
Release notes

Cell Ranger ATAC 2.1.0 (Apr 4, 2022)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 528 MB
    md5sum: 3f44ba66ae789c2ab03f9c380a6718ca
    curl -o cellranger-atac-2.1.0.tar.gz "https://cf.10xgenomics.com/releases/cell-atac/cellranger-atac-2.1.0.tar.gz?Expires=1774674449&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=jMaOODiEwWpXd~mDBei3i4mqbSMsTXbuG8M37PvpygtAsfeFTc1Do3j-GZG5RQjdX9jRP2N3RcTCoMS3-WgOgEeNiXQ-yhwqVAL4NtJoI3F4lUu8mbTrtO~FRWjZ9gqpaRBplJLfC0-bieMhxyAgq6KIPQ8advrC~WO8BF1ohYcfpMm8PbkCpBNSdLPXgYdwPtAFRZvbwEFmfG2-ZAxi9bI3ZQCLoDPG1czUvSurOa0dAVDtLrbMHJROwuf63QvGdd49NnbbJSYdqu19HRe9TDqRXZSD-llY-1b75~8aqpQMGGQVDJboRD~qqS9ofqHT~sufDVml34J6ypTiZl1muA__"

Download is unavailable on mobile devices.

Cell Ranger ATAC 2.1.0 highlights

  • Added a batch correction algorithm to `cellranger-atac aggr`
  • Minor cell calling improvements
  • Added UMAP as an alternate projection