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Previous Versions

Cell Ranger ATAC 2.2.0 (Apr 30, 2025)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 661 MB
    md5sum: c616198bd9aaca393f99c71e07ae46b6
    curl -o cellranger-atac-2.2.0.tar.gz "https://cf.10xgenomics.com/releases/cell-atac/cellranger-atac-2.2.0.tar.gz?Expires=1770491312&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=EPlYQIgM4hFjterDJV0XsPIeD3AV3mwkCSYBeTpFoPxbYNjS1bnmbeHgpyaqCT3CeqBXTVMse-CSdmgAEEAZY8ArLkHtAsU8ch3dsPbmx0B~UNMKG9CmyuBqPCKCkGYr0fBjupN8Y7g79AxDEp8gX~Kp8ejqG~DF6b5~GJGZlqLnzolpehH5b3B5ulco4t5Rw~SW~aoThxC6TgkE0uo9r238fKMqPR5X-GrG3WW~EwqIN-U~cClUYiw8gmpSV97qgr9~2kmgHxOuXS984S13Jt6~09NvlQ134M-DpRehaGnB4JIVTSHpPHe-pOC3cbPGkL-IHZOZPTrOAxxLd3dkhw__"

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Cell Ranger ATAC 2.2.0 highlights

  • The 20,000 total cell limit has been removed from cellranger-atac pipelines, enabling the analysis of large datasets
  • Strand information is now included in the fragments.tsv file for easier downstream analysis
  • The --nosecondary parameter is now enabled for count and aggr pipelines
  • Minor performance improvements
Release notes

Cell Ranger ATAC 2.1.0 (Apr 4, 2022)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 528 MB
    md5sum: 3f44ba66ae789c2ab03f9c380a6718ca
    curl -o cellranger-atac-2.1.0.tar.gz "https://cf.10xgenomics.com/releases/cell-atac/cellranger-atac-2.1.0.tar.gz?Expires=1770491312&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=ObyEbi8F2GsHS7XbvYNdoADxhZDYXl6uVmwzhUhBlvVogTD9C0yiJxmGNFKdoeBkXdREt~hEhGobEQSx~Z4V-TvAFSNGOHdYCsSTA-6jDdn~iZcvr7iygG5Pwuk4j6CPBFXxNrVJBaKLOm98VKmAH-R~QTTx5~ACD3~dy1RO61nPQkbeXUpCaWPjKzVhSW8Xsd1ZiFkCLveYaDBO5370hNUFYegc6EPnDuwZykfWDMWbLqVLUBqt2qm8WiLQ73K6AvjGDdgQOhHO2HDFUqSORVDwJDnNpmm0XCeoPpIwUi5xAGktDKpphMOBddxUhCvllGJbGcd~IId4r5k4K-Mhkw__"

Download is unavailable on mobile devices.

Cell Ranger ATAC 2.1.0 highlights

  • Added a batch correction algorithm to `cellranger-atac aggr`
  • Minor cell calling improvements
  • Added UMAP as an alternate projection
Release notes