Previous Versions
Cell Ranger ATAC 2.2.0 (Apr 30, 2025)
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Download for Linux 64-bit (tar.gz)File size: 661 MBmd5sum: c616198bd9aaca393f99c71e07ae46b6curlwgetcurl -o cellranger-atac-2.2.0.tar.gz "https://cf.10xgenomics.com/releases/cell-atac/cellranger-atac-2.2.0.tar.gz?Expires=1774668683&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=kGRSYaBoMaQWC8xq3HWUDCo5AqQNoDAxIKed6TmxYLM2yfsaktvX2I4nWEkFNArMO-9uMEXVDm-ZliUMDYFYsImwLGdlHTbAXhzYFflzGbdY7Eyhwe~CGTlPtHWn4FDDivvf0LL-yuA9MfWiRn1-9uazm4htVvd2S-67HdtCxiwNtCtXOd56~kAslSfaqlGj7grPrx8LphSLItX-IFlyCo-VMK6GtsBnnY4~P3i4M4lFw3ojBhZ2S7C3Ojgvw4kW2vs4Yruqp5b535OLmCpnTPycnxuoxyu5vq3JMKs5pYOrsBAt0mXXyb2aPFafzsvZYj1V0ODBdHC3R-FLlEAIDg__"
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Cell Ranger ATAC 2.2.0 highlights
- The 20,000 total cell limit has been removed from cellranger-atac pipelines, enabling the analysis of large datasets
- Strand information is now included in the fragments.tsv file for easier downstream analysis
- The --nosecondary parameter is now enabled for count and aggr pipelines
- Minor performance improvements
Cell Ranger ATAC 2.1.0 (Apr 4, 2022)
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Download for Linux 64-bit (tar.gz)File size: 528 MBmd5sum: 3f44ba66ae789c2ab03f9c380a6718cacurlwgetcurl -o cellranger-atac-2.1.0.tar.gz "https://cf.10xgenomics.com/releases/cell-atac/cellranger-atac-2.1.0.tar.gz?Expires=1774668683&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Z2RN--M5ZzjgvrGcxuX9w4cYyQKSWeQJM5oPEY5TrbX4DBZL4oLQs3pM6BohlJAbA0U8rUc-wHMhZFcHJFJN1aAuETbeMEUq5V6qZuj74m-FeLlJdXwkFoDxinOVo3YFHC8broZYcZRa~ZyoLxdut7OPMCgu7VkkGjuHs0QrOZGpwmUtkvtYkvvS0VLZ15C7RUQfJZJ0XQTH78r4rBp5XvWP-mWUlKqWCEnVfSe9jfic0CyWM6DzTP9TQGk986JZbi~Qjh19Qi7tkPeGrpEq51rZ9J8fH3Z18HyROMoPS5rh-EGpt6qdu0qv-qyzxjllEWiWbsHY2Y6qQFzjArkujQ__"
Download is unavailable on mobile devices.
Cell Ranger ATAC 2.1.0 highlights
- Added a batch correction algorithm to `cellranger-atac aggr`
- Minor cell calling improvements
- Added UMAP as an alternate projection