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Previous Versions

Cell Ranger ATAC 2.2.0 (Apr 30, 2025)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 661 MB
    md5sum: c616198bd9aaca393f99c71e07ae46b6
    curl -o cellranger-atac-2.2.0.tar.gz "https://cf.10xgenomics.com/releases/cell-atac/cellranger-atac-2.2.0.tar.gz?Expires=1770486433&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=JjAA4yeLPdLvs0QmW4OkP~ZTdzsILaD7kyY-Rfhirim~owVJQg2ZOpwCBfUp1ZvRjKwy8H2-q3LEQ7dxJpnCK2BT5-UXaZS~s1GdZzBVUBd4hOl~0v8h4nwX5g4swlRpDmB3EoCzwyokbWDSMFuqrqCgcI0CfPyJ2ok0sjJmmYconmnVCzwGlcaGsVQ17sF9csB0YqfuJvkacsLWkcQdw~ka8H4y5J4zGjjm8XBtM0X30JAIoFwri044i6~QrI5UV3r3m4V3w5ZiB0n811-wii9miWPPHDOhsjN0JmWv~~qZUjKVSD~btXjNH84N74CCbgTOSxCTLaCaTC4VhYuX5A__"

Download is unavailable on mobile devices.

Cell Ranger ATAC 2.2.0 highlights

  • The 20,000 total cell limit has been removed from cellranger-atac pipelines, enabling the analysis of large datasets
  • Strand information is now included in the fragments.tsv file for easier downstream analysis
  • The --nosecondary parameter is now enabled for count and aggr pipelines
  • Minor performance improvements
Release notes

Cell Ranger ATAC 2.1.0 (Apr 4, 2022)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 528 MB
    md5sum: 3f44ba66ae789c2ab03f9c380a6718ca
    curl -o cellranger-atac-2.1.0.tar.gz "https://cf.10xgenomics.com/releases/cell-atac/cellranger-atac-2.1.0.tar.gz?Expires=1770486433&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Z5jGzTkVjxZ2q-47cBghaXBnYi4uB83L-dplvQ4IKcNg00FdKaWt4buJzHx9scT6baanjIUbd9hMgkMJuAbHZvQk~sAx1~Bn9XNxqUzDv2DYYXLUaRHTtaeckNjbdudvHGqMMvql3gSCLxLR1ZEzxts41aqgQg~xqDcnxPv-wDxx3F7ebpoBWBiKQ5jaUPMxBHZ~IeJsgWeM3OQ9Q2TgHtgDg~jIpzDxwJp-qimDYboz4dbTTHLPV7GAOS62OXXr643ddIooFeNqg6cTvNhqKqhSYVGTZ9xz1EnVeI~LyF3-BgcPX0cAK9JuTVuJ~O8WuUn1Ztis1m0Cb8LBN1~hGg__"

Download is unavailable on mobile devices.

Cell Ranger ATAC 2.1.0 highlights

  • Added a batch correction algorithm to `cellranger-atac aggr`
  • Minor cell calling improvements
  • Added UMAP as an alternate projection
Release notes