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Previous Versions

Cell Ranger ATAC 2.2.0 (Apr 30, 2025)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 661 MB
    md5sum: c616198bd9aaca393f99c71e07ae46b6
    curl -o cellranger-atac-2.2.0.tar.gz "https://cf.10xgenomics.com/releases/cell-atac/cellranger-atac-2.2.0.tar.gz?Expires=1765095705&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=SgX3Sh1HZ0lSd79z~O~DnYskqNCeUdrGm48z4XMlRJ-51UWKAgYXffe7ZpqZdXPm~itl89wMbfa9iGfWBDW2nCU9PeznwbQp2l6Ym9~jLg-VLxyWX84PfW7kyEo6-EadG8AhZJc75hKW0ZPhS5R9lFlTAsVhd~91A9nc5nGJXf-GTPH4rGX5iSgw3oF7N-frKJ1DzGHFhgdgk05~vdTYmzZ6k~DUU3Muk1UQBwyQ2d6VXWxexZ4XgRaVYL3NLPj822h-9-iAN-KHegIOzgdcg3~vbx8KeMjUGm1yx09us4MlXo7uXO-GZgu37GUuKUOPBYpfFMtd0TpRoUECo2GNBA__"

Download is unavailable on mobile devices.

Cell Ranger ATAC 2.2.0 highlights

  • The 20,000 total cell limit has been removed from cellranger-atac pipelines, enabling the analysis of large datasets
  • Strand information is now included in the fragments.tsv file for easier downstream analysis
  • The --nosecondary parameter is now enabled for count and aggr pipelines
  • Minor performance improvements
Release notes

Cell Ranger ATAC 2.1.0 (Apr 4, 2022)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 528 MB
    md5sum: 3f44ba66ae789c2ab03f9c380a6718ca
    curl -o cellranger-atac-2.1.0.tar.gz "https://cf.10xgenomics.com/releases/cell-atac/cellranger-atac-2.1.0.tar.gz?Expires=1765095705&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=BzX2MnbDA-d~6YOBQH1KXWzZToNk51Ognm3KZxBOnD0-7dW1-qOXtd8zof8FpnLLSEUoDoUAQZu8FtNzDgwXpK~QZpQvbZira0MLsC3cu~BiVtAWbQp-zfXPsiVzoH-o35CgKChNWlgWvDEa0E~R~jRmhv0ADTsa0xYfjw8UlKpRbtI-lCy3ykjBv4Cw5EqY72bt5NpADyyWitFpyexIvTB02EcEwVyJ1rF5Ff5JDfa1W4KrCqS8fcDN6EUjnWkEaEb3SgituDm40u6ExfPxDDt93RedwQ~QD3UakwNWRECZCF2OtPhggTIySegsXIPb~qTWuhU4Unwpndr7CoesMQ__"

Download is unavailable on mobile devices.

Cell Ranger ATAC 2.1.0 highlights

  • Added a batch correction algorithm to `cellranger-atac aggr`
  • Minor cell calling improvements
  • Added UMAP as an alternate projection
Release notes