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Previous Versions

Cell Ranger ATAC 2.2.0 (Apr 30, 2025)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 661 MB
    md5sum: c616198bd9aaca393f99c71e07ae46b6
    curl -o cellranger-atac-2.2.0.tar.gz "https://cf.10xgenomics.com/releases/cell-atac/cellranger-atac-2.2.0.tar.gz?Expires=1770485620&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=NqSjY9PFoN~tJo0oeofZNzn5~0ZEc1xaZ7EBz9JTbtt1G92vY6n5gnAF2fN-BW7Az4u0On2JEx3mF30DJFW6zJbJ~b6f9~VO6I~JLWU6Spz6lqAtR-sP68K7KMy1zv2p6rrynWZPAhpj6NbUcGXJnyP941tO9-~hmYB3zkmYG-lb4xBfO2ezSu4Z8NxMOCntLjGhMw5sgcd66uD9FY58iSvHhKpepoP54nAv8Sf-~1IZS1lcm8H4CbRsQPSdM~Ndi~ddJGn~1~QEVoidbT3E-08pllptzpvFn770zK2pz6TyEd1X88zEMHXhko4rXV~U2SomL2-PjNK2pO7Px3HbUw__"

Download is unavailable on mobile devices.

Cell Ranger ATAC 2.2.0 highlights

  • The 20,000 total cell limit has been removed from cellranger-atac pipelines, enabling the analysis of large datasets
  • Strand information is now included in the fragments.tsv file for easier downstream analysis
  • The --nosecondary parameter is now enabled for count and aggr pipelines
  • Minor performance improvements
Release notes

Cell Ranger ATAC 2.1.0 (Apr 4, 2022)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 528 MB
    md5sum: 3f44ba66ae789c2ab03f9c380a6718ca
    curl -o cellranger-atac-2.1.0.tar.gz "https://cf.10xgenomics.com/releases/cell-atac/cellranger-atac-2.1.0.tar.gz?Expires=1770485620&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=L17JdrBJy2tuK4b2~~l-Kxlzs4M1jBEtsg2uBPxjS91j-IeZQwhieD7rmVXUbVbn-8AoIPeH0kx34q4UXG8JyW~Qba6sduQr7n4lBtnIDuybGCXhMNp9DeZfPJ1WG-0bAQBNB9SAFZF0KbJkQ04tEUu3ChY0H481EFrwxFrrMHp7ia5BUM558E0uTcYzT2qDdWcAp-3QwXScvik~XocDbZh2r-8Ji9QQo1fgvU6aFgQSaGDoD~BpU6~UCdFwag9VoH~e3HjLnykdShIn-aPhqloY2LlS8pw69lSrw8tc9iBFApbcLPmvtIuXoZr2y3-31dlq8BOAN1ZCqVXcVTiAuA__"

Download is unavailable on mobile devices.

Cell Ranger ATAC 2.1.0 highlights

  • Added a batch correction algorithm to `cellranger-atac aggr`
  • Minor cell calling improvements
  • Added UMAP as an alternate projection
Release notes